NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207840_1021115

Scaffold Ga0207840_1021115


Overview

Basic Information
Taxon OID3300026910 Open in IMG/M
Scaffold IDGa0207840_1021115 Open in IMG/M
Source Dataset NameTropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 65 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)647
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NameLuquillo Experimental Forest Soil, Puerto Rico
CoordinatesLat. (o)18.0Long. (o)-65.0Alt. (m)Depth (m).1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013064Metagenome / Metatranscriptome274Y
F075359Metagenome119Y

Sequences

Protein IDFamilyRBSSequence
Ga0207840_10211151F075359GGAMSRDPEEERFARGDRQRYSGWSSAITIAVIVIVLGIVFLVYYLK
Ga0207840_10211153F013064N/ALTVKFHENKPNNVFKITKYTYASNGVRIDWLNGAKESVTVFAEFSGGKMAQQQNGDKPRRPFHRC

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