Scaffold Ga0208662_105896

Overview

Basic Information

• Taxon OID: 3300026885
• Scaffold ID: Ga0208662_105896
• Source Dataset Name: Hot spring microbial mat communities from Yellowstone National Park, Wyoming, USA - OSPB_host_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2133
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location

• Location Name: USA: Yellowstone National Park
• Coordinates
  • Lat. (^o): 44.733
  • Long. (^o): -110.709

Associated Families

Family	Category	Number of Sequences	3D Structure?
F031931	Metagenome	181	N
F051270	Metagenome	144	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208662_1058961	F031931	N/A	TPPSASLVSSTIYPFKVADAMSIGLGLTATEGGVQLSKGYTNLYSQILAETDSAVFHAIIYSELAPLQSNTLIESITPVISLESLLKILQQQENIQLQLYGSVEQAVLPPGVTLCVPQSVTSGSVSGETVTENVGVQYASCLPPEGLEFDEINIVSFLGFPPYNQTDEISTNAYLGLPSPNQTDEIAVSYSVRT
Ga0208662_1058963	F051270	GAG	VISMKVGIYGYLRIKELGKTIKNNINYQQLMPLLFQLLNNTIGNIIGANYIDVQGYGNNATVTVGTNTITFSASITVPYLNGFNAILYGYFNLGRNNYMIQLATINTTEQIPAGTYTFEWIISFADPSGIIFNLMALSLTGNLKSVSVSFSP