NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207801_112202

Scaffold Ga0207801_112202


Overview

Basic Information
Taxon OID3300026810 Open in IMG/M
Scaffold IDGa0207801_112202 Open in IMG/M
Source Dataset NameTropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 16 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)527
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NameLuquillo Experimental Forest Soil, Puerto Rico
CoordinatesLat. (o)18.0Long. (o)-65.0Alt. (m)Depth (m).1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003551Metagenome / Metatranscriptome480Y
F010636Metagenome / Metatranscriptome301Y

Sequences

Protein IDFamilyRBSSequence
Ga0207801_1122021F003551N/ARALGYGIYSVRKWTEDRLRRTEADLKSNLPIRVDQNTTLVDVKYERTHSAYWYVIDKPDQFDPQETARQVQIGVCTNADNSRTMKKEGFSYEYHYRTKEGLALTDFKITTCE
Ga0207801_1122022F010636AGGAGMKVLSGLLLTPTFAAALLLACTQTNAAHRGGGSAYDGTWSVAIYTQRG

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