NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207737_106630

Scaffold Ga0207737_106630


Overview

Basic Information
Taxon OID3300026804 Open in IMG/M
Scaffold IDGa0207737_106630 Open in IMG/M
Source Dataset NameTropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 2 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)810
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NameLuquillo Experimental Forest Soil, Puerto Rico
CoordinatesLat. (o)18.0Long. (o)-65.0Alt. (m)Depth (m).1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F024236Metagenome206Y
F096399Metagenome / Metatranscriptome104N

Sequences

Protein IDFamilyRBSSequence
Ga0207737_1066301F096399N/ARSPEWSPAFPDMNTLNVDDEYWTIREVCELVKDDDGVLPDEIVDELKNAMHGVRRLLELLGRSRTYATGSQCLLELLDNRIKTFRTKR
Ga0207737_1066302F024236N/AMHLVLVFTVAVGLYVLGMIVLALAAILGSVRGNRELKKLEPEPRPGDY
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