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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300026802 Open in IMG/M |
| Scaffold ID | Ga0207511_100051 Open in IMG/M |
| Source Dataset Name | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-SCHO22-C (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 28463 |
| Total Scaffold Genes | 25 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 17 (68.00%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil → Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts) |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Wisconsin, United States | |||||||
| Coordinates | Lat. (o) | 43.3 | Long. (o) | -89.38 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F002416 | Metagenome | 561 | Y |
| F013685 | Metagenome | 269 | Y |
| F035446 | Metagenome | 172 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0207511_10005113 | F035446 | GGAGG | MRERGSIWPVISVAAGAFFVLVIVPLVMQRQKSGRMATVDPHVTIGDAIGAEELSRSGPSYRWPDSEVPRTAERLRDLTAVAIAATNNVIEGAMRGRIPGDTEAIVSNIVQLQLIPPEWVTNQPGVLKTAHGTIHLRYLPSGLSVEAISVPGERTDGPAMLIRLPDLENVGVGPRYFESMQVDGIAYPEPFAPIATIIASGWQPRNFKQTQIADDQKAQLIQWANTAAQAEQK |
| Ga0207511_1000514 | F013685 | GAGG | MKRTFKHFLLGTLTAVLLTPMTCQAQWTVFDPAQYSLQIERQIEEANRWLERVRQYSEEINKLAEQLSTMKGVLGQAEKLVLHNDNLTRTMAQIGQTVRDVFALKRAIETMVISRLNMIKSIKTRLMSGIFDPEADLRDFEDYLRDSLGRQEEDKIATMNRIAMFDATLARLYHDLQTAEARQAGAAAELKQAKDKLDAELAKPQTEQCPHCISDLKLEIASCEKMIADLDTQITNLSTQIEDRVKRYNLTMEERVRIANRVKATDEAWDKLNIVKDGIFDAIQRGGVPTPTP |
| Ga0207511_1000517 | F002416 | AGGAG | MNYMNGSSDFPELENSRAVFVGRKLITLALALKTLNGVAALIVMVIFGVASVSAQTPTGSFFNGNSSQLGNSIRSVTFFLAAAMIVAGIIFVAVGIITSGLRESLSTWKFITGAACFAFGGVCAAIYASSQGDTVALDNQF |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |