NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208210_100853

Scaffold Ga0208210_100853


Overview

Basic Information
Taxon OID3300026683 Open in IMG/M
Scaffold IDGa0208210_100853 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from Chapel Hill, North Carolina, USA that are Nitrogen fertilized -NN352 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)543
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Grasslands → Soil → Soil Microbial Communities From 10 Grassland Sites In Ca, Co, Ks, Ky, Mn, Mo, Nm, Sc, Tx, That Have Been Nitrogen Fertilized

Source Dataset Sampling Location
Location NameChapel Hill, North Carolina, USA
CoordinatesLat. (o)35.913Long. (o)-79.056Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005858Metagenome / Metatranscriptome388Y
F062048Metagenome / Metatranscriptome131N

Sequences

Protein IDFamilyRBSSequence
Ga0208210_1008531F062048AGGVSSMPNVTNFQPVAWWWTRRRIGRVLRERYNVLKDLPPKLLTLIGKLDAIEGKYLLRYAPPVGRRSVEESD
Ga0208210_1008532F005858GGAGMSHQYKAGDVVTVFQISPSNELVIEGKATIRKRVAEVDEQYRVEFANKPGVTCQRFVDSWGQDDPEKYVKDFNRRF

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