Scaffold Ga0209648_10031733

Overview

Basic Information

• Taxon OID: 3300026551
• Scaffold ID: Ga0209648_10031733
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4608
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: Laytonville, California, USA
• Coordinates
  • Lat. (^o): 39.7392
  • Long. (^o): -123.6308

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001681	Metagenome / Metatranscriptome	652	Y
F004205	Metagenome / Metatranscriptome	448	Y
F006201	Metagenome / Metatranscriptome	379	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209648_100317333	F006201	AGGAGG	MNPEEKVSLTTAFEALGPERVTRGLAATGHRWNDCFLAIATYGEPDALAREMAKSRRKKHVVGALIGVPVEVVNEVVRLWDHDEQSFRALAAEWLELSRAAVPTAPAATAWAQP
Ga0209648_100317335	F004205	GGAGG	MEAHVTSQSQSFRLVEKMERASIHHGQEIRADLPNVRVLALAGGEEGQVLFCNMGPIRVRQILHGGDGRPLPTNVRLEGLEVFASGTYDILNAFVSSNGDLRLVVDDQTRAVPVASVVGAAIV
Ga0209648_100317336	F006201	AGGAGG	MNPPQKPLLTAAWEALGPERVTRGLQASGHTWNDGFLALATYGEPGVLARELDGHWRREHYVGALLGVRVQVVNEVVRAWDYDEGAFRALAAAWLELNRAAVSRSLSTEQA
Ga0209648_100317338	F001681	GGTGG	MKTLRLQRDPDGFFLWHPDYAPWIVGRHSLGANPNDRAFFDPNAGDIVWSSREGMKDYEMDEVAARHLVGELVEMPQFESEREVEDWFLERGFKVEWI