Scaffold Ga0209648

Basic Information
Taxon OID	3300026551 Open in IMG/M
Scaffold ID	Ga0209648_10000033 Open in IMG/M
Source Dataset Name	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Ga0209648_10000033 Open in IMG/M

Source Dataset Name

Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	77965
Total Scaffold Genes	67 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	57 (85.07%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (100.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

77965

Total Scaffold Genes

67 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

57 (85.07%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location Name	Laytonville, California, USA
Coordinates	Lat. (^o)	39.7392	Long. (^o)	-123.6308	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Laytonville, California, USA

Coordinates

Lat. (^o)

39.7392

Long. (^o)

-123.6308

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001095	Metagenome / Metatranscriptome	780	Y
F001292	Metagenome / Metatranscriptome	729	Y
F001684	Metagenome / Metatranscriptome	652	Y
F002424	Metagenome	560	Y
F050256	Metagenome	145	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209648_1000003315	F001095	GAGG	MRKSKKVLDKGTEARRAARNSGIAPAVTRVIPDKRKRPAKHKKQLIETEAE
Ga0209648_1000003319	F002424	GGAG	MRRYSIVLALAALCLFFGTLSGSAQDTKADSSQDPVPWYDPKRYDPRKLIKHSPKSANDQLASDGDLEVKLTHQLQTQGILTADKNLQDACSAFKYLDDCVASLRASRTLKIDFSCLKWDVTGVKPKPVADSCAGPAGGRAMSLYRAIDLLKPDSNAKVEAKEALRKARDDIKDAGG
Ga0209648_1000003342	F001684	AGGGGG	MGDKSDSAISRREFARRAAFVSAAASLAPSNLLNAESPTTPPHAQQPVKPPKLSPESEAEVEARIQSILAQYGKRFSSAQKADIRRLAAEAQPLLERLRAFTTDNEAGPGLYLKPLIEREKKPSPTPAKSKPASARKSS
Ga0209648_1000003346	F050256	GGAG	MRLAAPVKPTPAKTEQIILFRVSGQLFAVSSASVQEVRSTDSMSGSETEISVPGLRKVRHVVRRGDRSLFIVNGAMHFGLHATEGGLLFVLRKTRTALLIDGIDKMATMTRLQALPLSFCHEERQWYRGLTALDQSVIPVVKPEGFLSPEELALLDAALLEADNTAAAAHEETESPQ
Ga0209648_1000003355	F001292	GGA	MAGRGDVGKSGGLTLIANEPDCAERLARFFPQARPVKIPVQVTASRGGKTSLREQAVVEFGGPDHAIFLSTLPLEFDDRVRIEASGGGRPTEAAVVGVQYHEGSKAVAVRFLQGPCDWVVTQQ

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209648_10000033

Overview

Ecosystem & Geography

Associated Families

Sequences