Scaffold Ga0209805_1031840

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209805_1031840

Scaffold Ga0209805_1031840

Overview

Basic Information
Taxon OID	3300026542 Open in IMG/M
Scaffold ID	Ga0209805_1031840 Open in IMG/M
Source Dataset Name	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_148 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2700
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location Name	USA: California: Angelo Coastal Reserve
Coordinates	Lat. (^o)	39.7392	Long. (^o)	-123.6308	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F039066	Metagenome	164	Y
F041122	Metagenome	160	N
F050252	Metagenome	145	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209805_10318402	F039066	GGAG	MVGVNRTALILVCVAIGLLGGSGLMAPNVRAAPGPTLSIVSPANNAIVGNGSPVAIVFAVTNFNLTEPDAGPSTPDSGHAAVLVDGGFAETSSTNTVVIPLPSGPHSIRLQLVMNNGSALNPDVTASVAVMVTRGPATGAPGLSIVSPREGALLGTDSTVSFRVTNFVLVPAGDPAGVPNEGRIRVRLDAANYSELTDAAPLHLNLKDGPHTLTLELIDSGGQSLTPAVAATLHISVRALLGRVQPFDATPYFALANVLLGLGIVAAIYRKLEVD
Ga0209805_10318403	F041122	GGAGG	MRTLQHASERGSDSRRRSYVLVLSVIGVLAASFSASTAKAVAPALFILSPSDGTIVPGGNPVMVRFAISDFTMVQPGRAGQVGNPNEGHARAYLDGQVVRLVADPEPFSLSLPSGPHTIRMQLFADNGTPLSPDVSASVRVIATQGPAAGVPEIKILSPTPLEATGHGIYVSYRISNFTLVEPHGQPNAPNEGHLQLLVEGIVVMEVVQYDPVLLVSLPDGDITIGARLVNNDGSEVTPSAAASVAIHVAASSAVSLPLVSNGGIALLLAFILVVLILRRRQAARGNEKLRVEKP
Ga0209805_10318404	F050252	N/A	ALVPDVSASISVTVTQGPATGTPQIEIRYVEITFPTPGLVLGRDVTVSFQITDFALVAPVRREPVPNEGHIEAYLDGVHYSSVTAFRPIPFSDLPDGDHTVTLRLVDDAGTPLTPDASDSVTFRIQFAPIVDINPYLSVTQIILAAAILVVLFYRDWGRSVLDRLVARIRGRNA

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