NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209376_1066490

Scaffold Ga0209376_1066490


Overview

Basic Information
Taxon OID3300026540 Open in IMG/M
Scaffold IDGa0209376_1066490 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1983
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F039066Metagenome164Y
F041122Metagenome160N

Sequences

Protein IDFamilyRBSSequence
Ga0209376_10664902F041122GGAGGVSPHPRPPMQHCQVRRFSTVLALVALMSILGVSLSSSTAVAAAPSLTIVSPADGAVIANGTPVHVDFLVSNFAFVQPGRVGQVGSPNAGHANVFLDAQYVRLLTSVEPFALPLTSGAHSIRIQLVADNGTPLSPDVSASVSVVATHGPGGGIPRIQILSPTRDESTGHGIYVSYRIENFTLVEPRGQPNALNEGHVQLLVEGNVVMEATQYEPVLLVSLPEGDISVTARLANNDNSALLNPDASSTVSFHVIASSSVSLPLVSNGGIALLLAFILVVLILRRREVAERDANARGGNP
Ga0209376_10664903F039066GAGGVNARIVALIVAIVGVLVASGISASNGRAAPLPTLSIISPTPDEVIGNGTPVAIVFAVTNFNLTDPRNGTSSPDSGHVDVFVDDALTTKTSVNTIVLPLPSGPHTIRVRLVTDNGSALNPDVTASVSVMVTRGPAGGTPGLSIVFPGEGALVGTDWTLSFRVTNFLLIPPGGSAGVPNEGHIVVRLDATPYAVLTDSAPLHLNLKDGPHTVTLQLVDNAGRPLSSNVAVSLHVTVQALLGRVTPFDATPYLALANLLIGLGILAAIYRKLEVH
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