Scaffold Ga0209056_10001471

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209056_10001471

Scaffold Ga0209056_10001471

Overview

Basic Information
Taxon OID	3300026538 Open in IMG/M
Scaffold ID	Ga0209056_10001471 Open in IMG/M
Source Dataset Name	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	26001
Total Scaffold Genes	25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	13 (52.00%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location Name	USA: California: Angelo Coastal Reserve
Coordinates	Lat. (^o)	39.7392	Long. (^o)	-123.6308	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F008444	Metagenome	333	Y
F010880	Metagenome	298	Y
F014022	Metagenome	266	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209056_1000147117	F014022	N/A	MRDEVKQVSNKAQAAATSAQPYRRHIVGLPLQRSLFVQAARAATRIGLPGLSSELDFPARLDENGDLFLDRSQVAALSKALPSWFTPETLELMHARHAAACDALVDASENGARAAVSLNGASARKSSEDLANRMALVLAYGILSKFVPDVLLRALVDAGDVEPLPFPETSAGADLMQNTFALYQACCVLEYTPQRLQREWPRVSPEVFRLVGEFCKRQTGFGSLAWDSPGYEDPNYVIRLLHSAFDEVNAEQVRRRLSFAKRPVVARPTIDAPTKIAALRCVLGFWLDFLERETWYVRRAFYVGMIPLLKQMATEYRRQIPTFQSADLLFLDVRELIGGIVDPAVIETRRRRYMGNTEYLSLHGVEPSRLATVLGSS
Ga0209056_1000147118	F010880	AGG	LLVYALDAADMRSGKTGLNSRSPDSSAAYIREGEAQVRRILLIEGKLGEHRAGSFVEIDSKFLPGVYQFGVPDEMLAAGAETVTLMLNFPGAVIEPIFIHLVAYDPQDADRLGMAALGPEGRRAALRGAFPRLTAKELGDAR
Ga0209056_1000147119	F008444	AGGAGG	MPVQHAYTMKAGTKSKLLLVYATSADGTSGKTGLGKNLSAGSAAYIREGDSAACRVPIVEGRVGEWGAGAFAEVDPELLPGLYQFGAPDEMIADGSARAVLLIRFPDTVIKPVEINLVAYDPQDAERIGVWSLAGHKRHEFLRQALPRFTEMELALGEQAEKELKAKLSAEKES

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