Scaffold Ga0209807_1000313

Overview

Basic Information

• Taxon OID: 3300026530
• Scaffold ID: Ga0209807_1000313
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_154 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 21755
• Total Scaffold Genes: 26
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (53.85%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: USA: California: Angelo Coastal Reserve
• Coordinates
  • Lat. (^o): 39.7392
  • Long. (^o): -123.6308
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005778	Metagenome / Metatranscriptome	390	Y
F016187	Metagenome	249	Y
F031014	Metagenome	183	Y
F090796	Metagenome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209807_100031314	F005778	N/A	MQVSQVAYDRFVLELPPADATWRPLADPECLAETAAWLWDFGPKPLIAVIGIDRAAPSWLAAYKPRGVRFAPGGASAGVAVVLAKRSDLERFLSEGAPHEHTVLLWPRASEVKTFEALNGAANAWLKTVDGHATIQRGGEVYEVFSVLG
Ga0209807_100031315	F090796	GGA	VRNLVTAIVIVLACVGGLWLASIDARTDDTGIEAGLIFLIAAALSAIRPRAAILIAVIVGAPIPIVEAMRTSGLPGGIAALGFSFAGALVGAYLGILVRRTASSSRA
Ga0209807_100031323	F016187	GAG	MPDGTEIVCVGIPVEADKLREFVVRFMGAAGAGWNATRWSETLFGSAFEERFGEKVVVHHEDGPDGRRMFAIRRLPNDDSGAFEMAPAGA
Ga0209807_10003133	F031014	N/A	MIGGHLVRGARTAALVLALVALAGCDVRVPTSGGSISLPKEFPSDFPTPPSSKLVMASGPLPFLPPEMRGMTAQWSSTLSRAELETFYGKSHPAWRLTGAPITGPSAGPVSLGTIFLLVHDGDGIGASVSVGATNMIDSGVLVQATILPARPFPSPP