Scaffold Ga0209807_1000212

Overview

Basic Information

• Taxon OID: 3300026530
• Scaffold ID: Ga0209807_1000212
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_154 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 25999
• Total Scaffold Genes: 32
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (40.62%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: USA: California: Angelo Coastal Reserve
• Coordinates
  • Lat. (^o): 39.7392
  • Long. (^o): -123.6308
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027368	Metagenome	195	N
F028752	Metagenome	190	Y
F042090	Metagenome / Metatranscriptome	159	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209807_100021214	F027368	N/A	VIATVADRWRPRAFAAWALGAGTFWGLACVPIAMVFSTLSAYRLSQTVHVDDIVFGPTRSAIVDTLLVAIGVERTAVLVYVLQRSFDALVVAAAVTPIFLWLLGSSAIHAAARFRGVRGRPYLPLLVLFGYAELVYQAPTSLAGIVFAGGPFTGIADAVSVVMLVWFALVVHRAITLHYGVSGDQALAIFLIGGLAFYLLPLILIAVLLVSIVVAAAILQYF
Ga0209807_10002122	F028752	AGGA	MSGALRVVTVLNALIYFAAATYHSGLLVPAGALAAASIAEALLGLVLIGSLVGWVSPRIAYVIVLAGTLFGLTIVVLRGLLGVDLWIHVVMLAGLAVAFALLFTRRSA
Ga0209807_100021223	F042090	AGGA	MATMNSFDRAETSPGEYRPILRASATEPASESQQTECCCPELCQLDHDN