Scaffold Ga0209378_1002901

Overview

Basic Information

• Taxon OID: 3300026528
• Scaffold ID: Ga0209378_1002901
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_156 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11694
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (61.11%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: USA: California: Angelo Coastal Reserve
• Coordinates
  • Lat. (^o): 39.7392
  • Long. (^o): -123.6308
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012272	Metagenome / Metatranscriptome	282	Y
F017618	Metagenome	239	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209378_10029011	F017618	N/A	VPAFREVRLPTLAVIRVGGFEVNPVVASLTIHFGRVGGVVLSKLIAVLLMLGVRRRLWMVNLVYIGVICWNVVVAISLAVHRF
Ga0209378_100290117	F017618	N/A	VLLQLSTYSAYQETSLYSRLDHEFPKTWVRKLFLRTLNTRSSFILLQVLDLLTTLAAFRVGGFEVNPLVANLTIHFGHVGGVVLSKVIAVLLMLGVRRRLWMVNLVYIGVICWNVIVVVSLVLRGF
Ga0209378_10029015	F012272	N/A	VARTRVLPFSEMKKDTRLTFRVNSNLKRRVESIAEREGQSVARICEAFLLAGSEAYRRQGTKFLLRLIGRLDIKPTD