Scaffold Ga0209059_1005216

Overview

Basic Information

• Taxon OID: 3300026527
• Scaffold ID: Ga0209059_1005216
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_151 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5851
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (28.57%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium → Acidobacterium capsulatum (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: USA: California: Angelo Coastal Reserve
• Coordinates
  • Lat. (^o): 39.7392
  • Long. (^o): -123.6308
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017739	Metagenome / Metatranscriptome	239	Y
F054397	Metagenome / Metatranscriptome	140	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209059_10052162	F017739	AGGA	MSFNFSFGGTRALLMLSGLLSLFAAAGQAQTSSGQLTITMTVQSSITLIFQNNPAVGNTGFCPLTNAGTNNVGLDMGVAAFPGSFHTSTCVNYQHVGASFYQVSSAFDVVVSKSNSSSPNYRLAAEISTVPPVGVIWLINNVTLTTTGFTALDAADNYATPVTKTLQVQVRNNVPAQVLQETITFLATAN
Ga0209059_10052165	F054397	N/A	MKSATEGTISVTFVSAPDGAALTGGASGQRNLDLGPVSHAGSQTANVQVQKLPGHFVVSTKFGLSIQDGSHHTTTATILAALALPDFFYRYRLDGITLQTAPQLLQGQARVGPTVVHRLEIEVPTSITEKNSQLHNAIIVQIIPN