NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209059_1000504

Scaffold Ga0209059_1000504


Overview

Basic Information
Taxon OID3300026527 Open in IMG/M
Scaffold IDGa0209059_1000504 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_151 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)17929
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (78.57%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013435Metagenome / Metatranscriptome271Y
F053920Metagenome / Metatranscriptome140Y

Sequences

Protein IDFamilyRBSSequence
Ga0209059_10005041F053920N/AGAHNMLRFLADAGGVRAYLGQIGLTEREIGRLRTRLRG
Ga0209059_100050413F013435AGGGGGMLKLVRLTLLPVVLVLSGCDVQVHDETPAEYTANHDIGMYEVKATVERDAMVTPGSVFLFALDNNQRVPLTQEGPEYRGLYSVRCQSSFPLQILAEWKTQGFSVRKKLVPPQPRQIKLTEPPLAYEASFDASGKEPKGGWVGTVQYRFVTVASAQITAARIDPSSDAPADVKAAKAVSVLTRFPVVAGCGDRAEIRLAATDSHAHGTLVIDTDHPAVPHWSTKVEFAPR

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