NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0256869_1000264

Scaffold Ga0256869_1000264


Overview

Basic Information
Taxon OID3300026526 Open in IMG/M
Scaffold IDGa0256869_1000264 Open in IMG/M
Source Dataset NameMetatranscriptome of bovine rumen microbial communities from Lethbridge, Alberta, Canada - Rumen RJG_05 (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)19600
Total Scaffold Genes41 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (19.51%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Mammals → Digestive System → Foregut → Rumen → Rumen → Rumen Microbial Communities From Sheep, Dairy Cows And Beef Cattle From Various Locations

Source Dataset Sampling Location
Location NameCanada: Alberta
CoordinatesLat. (o)49.6935Long. (o)-112.8418Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F057035Metagenome / Metatranscriptome136Y
F075545Metagenome / Metatranscriptome118Y
F079361Metagenome / Metatranscriptome116Y

Sequences

Protein IDFamilyRBSSequence
Ga0256869_100026424F057035N/AMTEKEFLEKRIPIWLEGDDLHISTPSNMDKNDMHVFLSKKYGYNWMFAIRGYYMPGSHVTLYIGDYECPNCTTLVAPYLFNYFPDIKYVGFGCNKGKAGEIWEPKIIIVKDMSCINNDIFNKQTEESI
Ga0256869_100026428F079361N/AMIYFTISKNDCGYLIDSISEDYSTLKLKFPNETIYHSNEPIVSIYVIKDQLKSVK
Ga0256869_100026432F075545GAGMIQLIINTVMLREIDERKLINAYARLIYEKESDITDDNVIKVNLINLFDWDINGDNGLGIYCGKFESIKRKDWDVLIQFIKDNGYEIEKISRTPLKEKRLENIKIVNDFLEAKEQHNIERFTNENYTVSGRGKTARPCIYKGKEYKSRQECIYKEGITKYQLYEYLKETNQL
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.