NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0257168_1075491

Scaffold Ga0257168_1075491


Overview

Basic Information
Taxon OID3300026514 Open in IMG/M
Scaffold IDGa0257168_1075491 Open in IMG/M
Source Dataset NameSoil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DL-13-B
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)746
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Soil Microbial Communities From H.J. Andrews Experimental Forest, Oregon, United States

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)44.23Long. (o)-122.22Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015393Metagenome / Metatranscriptome255Y
F031771Metagenome181Y

Sequences

Protein IDFamilyRBSSequence
Ga0257168_10754911F015393GGAGGMMPLVAVCVYCSQKIEEKEKSVDVPHLGGVAHLACAQKVTIRTAPRR
Ga0257168_10754912F031771GAGGMVDGTFVQIAPVALPMAQGTVRGTVVTAVYALDSLGNVWKLMDHIGQKWMRVTAEREG

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