Scaffold Ga0209809_1005430

Overview

Basic Information

• Taxon OID: 3300026509
• Scaffold ID: Ga0209809_1005430
• Source Dataset Name: Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS-T MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7148
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Anoxygenic And Chlorotrophic → Anoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa

Source Dataset Sampling Location

• Location Name: USA: Wyoming: Yellowstone National Park
• Coordinates
  • Lat. (^o): 44.963
  • Long. (^o): -110.715

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015070	Metagenome / Metatranscriptome	257	Y
F040513	Metagenome / Metatranscriptome	161	Y
F041593	Metagenome / Metatranscriptome	159	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209809_10054303	F040513	GGA	MGALLFALDWLVRELECYCLLRRADSVCDEIDYLESTAFLDEIRQSPEYRSLR
Ga0209809_10054304	F015070	GGAG	MEELEQLGFIGTADYIDSQEDWRNPEWKSLNREFFTVVVDDVLDFLNEYYLPL
Ga0209809_10054305	F041593	GGGGG	MKRTNLHNELYKLAIAMHKHNGRGVKHNLDYLVRQVEERNKANNDYIQQSLPIH