Scaffold Ga0255350_1001471

Overview

Basic Information

• Taxon OID: 3300026502
• Scaffold ID: Ga0255350_1001471
• Source Dataset Name: Peat soil microbial communities from Stordalen Mire, Sweden - H.B.S.T-25.r1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8136
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (76.92%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Norrbotten County, Stordalen Mire
• Coordinates
  • Lat. (^o): 68.3529
  • Long. (^o): 19.0475
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F048199	Metagenome	148	Y
F067324	Metagenome / Metatranscriptome	125	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0255350_10014711	F048199	N/A	MTDEEPPPREDRPFDHLSLSDDQAHRVSCAFARPRDLRSLASDALFYSLVLEGRSPRIDEAARTAIRNYVDLTRLLLAALPARAEDLNLKLAALTPPDPLVAEHANLRAMLEAGARADIQRLKLPNPPHWILEWAIT
Ga0255350_10014713	F067324	GGA	MSEDDFDDDGFARPPRPLRPKGKRVKIHQHSQHTVIEFDGPYGPIHIESSTTITVEAIEDDLPPYRFDDGFAQPSPKRLPKARRR