Scaffold Ga0257156_1003139

Overview

Basic Information

• Taxon OID: 3300026498
• Scaffold ID: Ga0257156_1003139
• Source Dataset Name: Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NI-49-A
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3026
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Soil Microbial Communities From H.J. Andrews Experimental Forest, Oregon, United States

Source Dataset Sampling Location

• Location Name: USA: Oregon
• Coordinates
  • Lat. (^o): 44.23
  • Long. (^o): -122.22

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020576	Metagenome / Metatranscriptome	223	Y
F042457	Metagenome	158	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0257156_10031393	F042457	GGAGG	VGWSDLIRRRHPRVKTTVVGVAAAVAEAIVESTNVLQSRLGDEGFAWTDPARANTDECLLECAMFEWFLRDVVMSYGFGSQTEAIRRALAGRVLIDLQRSGVSSACLGGFDGRCRERFAEYAEALGASASLQPLGDRAWRRISGREEPSERMTMLLAMRASGELVALRGMAGNYRLVELQAVPPPVIGRE
Ga0257156_10031394	F020576	GGCGG	MRWIERLWRDDQRIKATPTRIAASLAEGVTRSTNVLRIRLQEEGFGPADHKRFESEACILECLLFEWFLRDIVVTVEFGRHTDTVRQAVARRLANDLDRTGLSPAVLLDFSRLRRERFAEYRSATGVSISLQTLGTLAWRRIADTAEPSERMTMFLAMRATAELQALRGLGKRYIVMTPPRSFFSAPSEE