NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0257153_1001325

Scaffold Ga0257153_1001325


Overview

Basic Information
Taxon OID3300026490 Open in IMG/M
Scaffold IDGa0257153_1001325 Open in IMG/M
Source Dataset NameSoil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DW-10-A
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4536
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Soil Microbial Communities From H.J. Andrews Experimental Forest, Oregon, United States

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)44.23Long. (o)-122.22Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F066203Metagenome / Metatranscriptome127Y

Sequences

Protein IDFamilyRBSSequence
Ga0257153_10013256F066203N/AMVEPLQLQSAAWALTTTLELALLVQLVRRKLARIYPLFFAYLVTVIFQSIAVAILYRNTNLDKVTAWKLAWATQGLVVLVRSLALVELNRRVLSRYVGIWALASRLFLCVAAAVIAYDLFLSKGEWQWLILNGIRGLELAMAAVIVTMLIFARYYRVPVNQLQRAFAVGLCLYSSFYVINYSVLEKIVKEYVVLWNFLGLFAFIASLLVWISAASRYAESEEVAVPQAIPADLYGKLSSEVNTRLLLLNRQLIQLLHLEDR

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