Scaffold Ga0257172_1024791

Overview

Basic Information

• Taxon OID: 3300026482
• Scaffold ID: Ga0257172_1024791
• Source Dataset Name: Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DW-16-B
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1068
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → unclassified Candidatus Sulfotelmatobacter → Candidatus Sulfotelmatobacter sp. SbA7 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Soil Microbial Communities From H.J. Andrews Experimental Forest, Oregon, United States

Source Dataset Sampling Location

• Location Name: USA: Oregon
• Coordinates
  • Lat. (^o): 44.23
  • Long. (^o): -122.22

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009694	Metagenome / Metatranscriptome	314	Y
F080967	Metagenome / Metatranscriptome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0257172_10247911	F080967	N/A	MPANRPNLALDEQSFQGLLSAAFTIQEHNDRLKLAGQTPEEPQARLEQANICPHCGAPKPAAPKAAEGSRCESCGLDEFRPGERLQHNWASMWLMSQAQRLWPERSPIAQEETAIIQQR
Ga0257172_10247912	F009694	N/A	MQQQRNRASHLNISPQTVKQHLRTLFLRAGIKEGRKRVKLATAMFIKEQVQPCNPVIG