Scaffold Ga0257169_1074356

Overview

Basic Information

• Taxon OID: 3300026469
• Scaffold ID: Ga0257169_1074356
• Source Dataset Name: Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DL-17-B
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 551
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → unclassified Terriglobales → Terriglobales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Soil Microbial Communities From H.J. Andrews Experimental Forest, Oregon, United States

Source Dataset Sampling Location

• Location Name: USA: Oregon
• Coordinates
  • Lat. (^o): 44.23
  • Long. (^o): -122.22

Associated Families

Family	Category	Number of Sequences	3D Structure?
F044335	Metagenome / Metatranscriptome	154	Y
F055869	Metagenome / Metatranscriptome	138	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0257169_10743561	F055869	N/A	RVFEDLERVMPANLHVVSLRPELNEQNQMQLDMKVAGDTRGASVELVHRMEGSRHFQGAQLASEAQSGEGVIASVISIYIPDSTYIPDSTDRSGK
Ga0257169_10743562	F044335	AGGAG	MPDFANSRRKLKIAIGVMLAADVVAVAVLFSPLVGSADSRQLQLNQLRVELYKKTRQVEPLIGMDKKIVLAKDQISGFYKDRFAAKDS