Scaffold Ga0257154_1006910

Overview

Basic Information

• Taxon OID: 3300026467
• Scaffold ID: Ga0257154_1006910
• Source Dataset Name: Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DW-16-A
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1500
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Soil Microbial Communities From H.J. Andrews Experimental Forest, Oregon, United States

Source Dataset Sampling Location

• Location Name: USA: Oregon
• Coordinates
  • Lat. (^o): 44.23
  • Long. (^o): -122.22

Associated Families

Family	Category	Number of Sequences	3D Structure?
F036396	Metagenome / Metatranscriptome	170	Y
F036945	Metagenome / Metatranscriptome	169	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0257154_10069101	F036396	N/A	MASFAQFLGRKVTVQYRVGDVLLPASGKFAADSGRSIFLEQHVEQRGKRSYFRWEIPYQYIHRIEEAPEIAEQQTTPEPAPAQPENSQAASASAGIGLSPSSAVSLLTLPQRPKAV
Ga0257154_10069102	F036945	GGAGG	MWKRKCPLCFVRIPWTVALAHSYDIDCPACHAALELSRFTRLFGAFGGIAGAYIVFHLVRRILHGLSWTAPMVAAILAFGTVSALFVLIAGDLVVRPKPAAESFPHPGK