Scaffold Ga0256326_1027298

Overview

Basic Information

• Taxon OID: 3300026412
• Scaffold ID: Ga0256326_1027298
• Source Dataset Name: Metatranscriptome of freshwater microbial communities from St. Lawrence River, New York, United States - Law_Atlam_RepA_8d (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 883
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location

• Location Name: USA: New York
• Coordinates
  • Lat. (^o): 45.0061
  • Long. (^o): -74.7949
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020197	Metagenome / Metatranscriptome	225	Y
F054064	Metagenome / Metatranscriptome	140	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0256326_10272981	F054064	GAGG	MTSNLNIPKISKANNMSEKGIKSLVGRKMTKPVKFMGEEVKISKLSVSEVLEIQEKAKNGDVDESAGFDLLKRVIKMSVEGASDLADSDFDSFPMDELSKLSNEIMKFSGIGGTEAS
Ga0256326_10272982	F020197	N/A	MSEDTLKPFSMGYVLRTTAKHMRKSIDISIRKTFERVPEFAGDQQKSQEVFKTLAFLHTMRKQLDDFQSQHSENFKGE