Scaffold Ga0257150_1017516

Overview

Basic Information

• Taxon OID: 3300026356
• Scaffold ID: Ga0257150_1017516
• Source Dataset Name: Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DL-13-A
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 995
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Soil Microbial Communities From H.J. Andrews Experimental Forest, Oregon, United States

Source Dataset Sampling Location

• Location Name: USA: Oregon
• Coordinates
  • Lat. (^o): 44.23
  • Long. (^o): -122.22

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004385	Metagenome / Metatranscriptome	440	Y
F023639	Metagenome / Metatranscriptome	209	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0257150_10175161	F004385	AGG	MLSKPAHLTLAILLLGVTCIPVFAAEREDVRKVINLVTSVKMPYPETLTRNRARTERVWLERGGTTTGCIRLEDRRWCYEYISPEGNRVEMLRIRNEPSRGVYIGALYYYMVDFDLDGLVDVGSTTRIDALDRP
Ga0257150_10175162	F023639	N/A	QQKITTIALASAVLSGVAFTPVIAAEREQVRAVINLIAAVKMPFPERFERDVARTEYVRLDGGGEMVACLRVDDKVRWCYEHIPALGSRTEMLRIRNEPVEGIQVGQLFHYVVDYDLDGLTDVGSTTRMELPAHAPVATVIQFFVRGTGRGDQFRTEYQKLYDDGIQVALKYLGE