Scaffold Ga0257180_1012847

Overview

Basic Information

• Taxon OID: 3300026354
• Scaffold ID: Ga0257180_1012847
• Source Dataset Name: Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NR-04-B
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1024
• Total Scaffold Genes: 1
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium 13_1_20CM_4_60_6 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Soil Microbial Communities From H.J. Andrews Experimental Forest, Oregon, United States

Source Dataset Sampling Location

• Location Name: USA: Oregon
• Coordinates
  • Lat. (^o): 44.23
  • Long. (^o): -122.22

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022208	Metagenome / Metatranscriptome	215	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0257180_10128471	F022208	N/A	LYPSLNKTDRIYVSFDDHLMAYSLADGQALWAKPASVEGNIRDIVQHPAGIIMLPEAPPEGEPTRSRRVINGVTQTGLNVARYEDGTTVAAKPLRMHGKVIDAMVAGDAAVLAVDAESRTFVNVLDVAAATLRLKKDVKIKGQLAYVELTPAGLLYVSRPDAATNAEVNIIDLATGEQKFKDAIESGKPLSADDYKAARYYLHHAVEGQTLYVFANRDHRLYAVDRDAGTFRALGGEIKLQGGEDPTDMEVRPTGIVLISPQNLVLVARDGRVKQQVYYPAPQLPGLVRALYAVNAVRAGLYGAAASAYGDAFTQASQKTTDPNARYVTGQLATAYSQSG