Scaffold Ga0257180_1001869

Overview

Basic Information

• Taxon OID: 3300026354
• Scaffold ID: Ga0257180_1001869
• Source Dataset Name: Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NR-04-B
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1900
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Soil Microbial Communities From H.J. Andrews Experimental Forest, Oregon, United States

Source Dataset Sampling Location

• Location Name: USA: Oregon
• Coordinates
  • Lat. (^o): 44.23
  • Long. (^o): -122.22

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005427	Metagenome	401	Y
F075947	Metagenome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0257180_10018691	F005427	GGTGG	MHMHIGIRPSVGSLATKIQGWISALATKMQRGIASLVKKAKTAMVLDLSANWIRNAIPPVAVLGGAAAFGFWQDSIGAGVFACFALFLLAGIYKALRQIVATLRGEPDRMIVANANWKLSRIGEPSEANFEMSTEAIEHLLPWVRDETALTEETAKAYCAVLLDTLATRHPKFAE
Ga0257180_10018693	F075947	N/A	FPETPQQQKGTERNLHRFSAAAGDESYGLTYADYPPSADWESVVDGERDSIVNSFAGAVVDERRTSVEGYPGKWTRFVGQNTSGELAIYFVVHRLYVLHAFAPKSTPRPENFSTFLNSFLLLSKPKA