NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0257170_1013112

Scaffold Ga0257170_1013112


Overview

Basic Information
Taxon OID3300026351 Open in IMG/M
Scaffold IDGa0257170_1013112 Open in IMG/M
Source Dataset NameSoil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DW-05-B
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1044
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Soil Microbial Communities From H.J. Andrews Experimental Forest, Oregon, United States

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)44.23Long. (o)-122.22Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015393Metagenome / Metatranscriptome255Y
F031771Metagenome181Y

Sequences

Protein IDFamilyRBSSequence
Ga0257170_10131122F031771GGAGGMVDSTFVQIAPVALPTAQGTVRGTVITAVYALDSLGNVWKLLDHLGQKWTRVTAEREG
Ga0257170_10131123F015393GGAGGMMPIVAVCVYCSQKIEEKEKSVNVPHLPGGVAHLACAQKVVIQTAPRR

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