Scaffold Ga0209057

Basic Information
Taxon OID	3300026342 Open in IMG/M
Scaffold ID	Ga0209057_1013170 Open in IMG/M
Source Dataset Name	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_146 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300026342 Open in IMG/M

Scaffold ID

Ga0209057_1013170 Open in IMG/M

Source Dataset Name

Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_146 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	5003
Total Scaffold Genes	7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (57.14%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

5003

Total Scaffold Genes

7 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

4 (57.14%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (66.67%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Archaea	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Archaea

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location Name	USA: California: Angelo Coastal Reserve
Coordinates	Lat. (^o)	39.7392	Long. (^o)	-123.6308	Alt. (m)	Depth (m)	0
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

USA: California: Angelo Coastal Reserve

Coordinates

Lat. (^o)

39.7392

Long. (^o)

-123.6308

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F003152	Metagenome / Metatranscriptome	504	Y
F052495	Metagenome / Metatranscriptome	142	N
F104901	Metagenome	100	N

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0209057_10131701	F052495	N/A	RLSEVARRNGSAEVNITLVELFSQEGTGTLIVLDPRFHPGMDPVTIRVVSPKSQDDAATYDLVHGGVRATRESAASEDASAEATTASPWERSDMTKKEWLGMFKSLAKRKERLEAPPRENSRDRESYIGLRDLVLADASVRQAFLVVHWKGRPSGLALLGQLLSAGTLVPEFDTDADYLEAELEHLGQGHADHRSKDGQWKLAHGWTVVREAADGNTRTYRANGKSAD
Ga0209057_10131702	F003152	AGTAGG	MAPAESDRGATDGDVVEFDHWIYGVVPGVGYTTKAVSHGLDAGLYDPYLRGHYTPIRAAAAQTAEDEVDLHMIHPLRTGRELLLSRISRGIPDEAGRPTFTNHTVIARTDVLRSGQITLEAVYRSVKEFDRKAADVGPEVPLLKVPARPEAEGPWRFGSGIHKHLTFPAIESLATRIMADPNSRTLLLCRNTTAEARKATLNLVYELLAWGCGLPLMTAISEAPRSSALNFFNFVVAPRGVRADSTWAILESALGESVLPRVLDRDEVYQVLTATVRQSADLPLAR
Ga0209057_10131704	F104901	GGCGG	MPRVVIVGDRNSGKTTFLGLLYAAQVKFGSDKADGFRFHAAFESLDEISGVFQRLMSGSFPDAATKEGIREIAFRLSYPKTGLGILSRRRSRGASPDPSASFQLILLRSFEDEVARWRSGGSVAHGTLSGALTSDAIVIMVDATSLAVADEEGELATLGKYDEAVEALLLATKRSRDQAEGKLLYPIFVFTKFDRVDPKVLRRAKLEADPPEVSKKGSHADYAKRLVDRSMPKTMAAIRSGGRRGLQFSTPSYFFSWVRTDAPVPGRAERIRLRRSGAVGWEPDYPSDEYLAFLECLGEIAADTRA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209057_1013170

Overview

Ecosystem & Geography

Associated Families

Sequences