NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0257151_1031705

Scaffold Ga0257151_1031705


Overview

Basic Information
Taxon OID3300026341 Open in IMG/M
Scaffold IDGa0257151_1031705 Open in IMG/M
Source Dataset NameSoil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DL-17-A
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)566
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Soil Microbial Communities From H.J. Andrews Experimental Forest, Oregon, United States

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)44.23Long. (o)-122.22Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017925Metagenome238Y
F037314Metagenome / Metatranscriptome168Y

Sequences

Protein IDFamilyRBSSequence
Ga0257151_10317051F017925AGGAGMSRWGASVLAILVATIPVGIIRAKPDDVNALQARFDRESNSVRKAKLLEKLGDAQLELTRRASQSNDYKTIGFVMEKYRDNARAAIEALKKEHRDAEHHTSGYKQLQIHVHKSLREVDETLVVAPDEFRPPLEVVRRDL
Ga0257151_10317052F037314N/AYDKLHQFKPALAAYDKFLALEQGKTSDQVWQAQQRSKVLRHMLEEKR

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