Scaffold Ga0209804_1189329

Overview

Basic Information

• Taxon OID: 3300026335
• Scaffold ID: Ga0209804_1189329
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 877
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: USA: California: Angelo Coastal Reserve
• Coordinates
  • Lat. (^o): 39.7392
  • Long. (^o): -123.6308
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000280	Metagenome / Metatranscriptome	1383	Y
F001079	Metagenome / Metatranscriptome	785	Y
F007262	Metagenome / Metatranscriptome	354	Y
F021376	Metagenome / Metatranscriptome	219	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209804_11893291	F021376	GAGG	LYLRHLSSLQFLTYASFFGVVIAAMFRFMPGKAPPVRTTPYSDEELGAHDRKLAKYFVAGGFFLVLGAVHMVV
Ga0209804_11893292	F000280	GGAG	MARMRGARPLFGYRDVGEDVRHSRGAIWRGWIILAVLVAFYLGWTLVVYFLEPGLR
Ga0209804_11893293	F001079	AGAAG	MAAAPPYVAYSTCTVGSIPAESWPAVYSSMQALKGHVQEYPGCQKLEAFVHVEDGGVRVHCYTTWDTPEQLEVFLERGYTFERMLADVAELSVERTYAMEKIF
Ga0209804_11893294	F007262	N/A	TRQRTGIYPVDSFGGYTTELAGPATFFFVLLTLVLAGFAVAIIVGHLVWGQKF