Scaffold Ga0209803_1002052

Overview

Basic Information

• Taxon OID: 3300026332
• Scaffold ID: Ga0209803_1002052
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_138 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12825
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: USA: California: Angelo Coastal Reserve
• Coordinates
  • Lat. (^o): 39.7392
  • Long. (^o): -123.6308
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013098	Metagenome / Metatranscriptome	274	Y
F039878	Metagenome	163	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209803_10020523	F013098	N/A	MRTAWLAAIGVAAALVGGCARAPFVGYRNGPVTLYIGDVRHICAAGGSTNRGCTMRYPNGHIEVYCADGDYECLAHELRHVADPTWEHDLDHRNVSAR
Ga0209803_10020526	F039878	GGA	MGCAACRQLEGLGEGEGVKLGRNWALTVVVLTTLTLPGCAPLPKVEYWDGFFRHLHPPKYMFQVPDGWRPVTTSDYPLLGFNRRLFQRLDEAGRTAAMQRAELEMQSGDTGLISSRGAWIQVRSQSGPGGWYTFKDLRFGLSDREKQAIWQRLAASLIQAAPPAEKPNLTLESLDVVEDYDVRNVLRLRFTADVPRGSMHWTILEFYGSSGVVTVAHVGIPEDREEGLAGLEVLARTFRF