Scaffold Ga0209801_1001726

Overview

Basic Information

• Taxon OID: 3300026326
• Scaffold ID: Ga0209801_1001726
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13339
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (92.31%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Nitrospirae (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: USA: California: Angelo Coastal Reserve
• Coordinates
  • Lat. (^o): 39.7392
  • Long. (^o): -123.6308
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F065617	Metagenome / Metatranscriptome	127	N
F098990	Metagenome	103	Y
F100842	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209801_100172612	F098990	AGGAG	MTGKITRKSMLWASCVWILIGAAVLLWSPMAEAQGTFSQAPQVRATQPAKIDRSQPGSKKGILTKAQGTTVWIDRASYVLAPDALVENKAGSPLELRQYQGDSVAFEVQYWLGTGSADRQITHMIITFPE
Ga0209801_10017265	F065617	GGAGG	MVTSILWALIIGMTFILTPQVEASQGPGATKMDAKLGVEVEGPFEMICTFLGRSKKVIIVYRHGPKEWEPKLSCNDGAGSQIARHVPADGGDPRLMITGWYADGREWKQCELKGWRNDPKGKSLSCQTPSGGTMTVTCTKGQCAKP
Ga0209801_10017266	F100842	GGAGG	MTRIAISVLCLLCVACGQASQTKAKTIVPGAGPRGVDMNTDIAVVVNPPVDFKCSFQGGGKKAFVIYRLVSDQWKPMMSCNNGSASDVLGHLVAEDPDPRRLITGWYEIGQGWQQCDIRGWKSDGNPPYLSCRTPDGWSSTFACTKGRCASP