Scaffold Ga0209152_10000379

Overview

Basic Information

• Taxon OID: 3300026325
• Scaffold ID: Ga0209152_10000379
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_107 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 21097
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (64.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: USA: California: Angelo Coastal Reserve
• Coordinates
  • Lat. (^o): 39.7392
  • Long. (^o): -123.6308
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016134	Metagenome	249	Y
F018901	Metagenome	232	Y
F039072	Metagenome	164	N
F063565	Metagenome	129	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209152_1000037912	F039072	GAG	MTLLGAATVLRGIILTKFMMSLRDENYRVLTGAAIDRGISVQELLRAVIIPDWVREIPRAIVAESWPSVRTRR
Ga0209152_1000037915	F016134	GAG	MPKNVLTVELKELHDLANEAAKFLKSKLEGRMKTKGTQVQIEDARTKQVKLLLHKFLHHQGLNHYRVLSQSGVLEVTPPEKHEAHPQEREGSPPTAAQTTPYYFPQAPALTPEKKRKTKPKHKSEQS
Ga0209152_1000037916	F018901	N/A	MLKTKIVAFLGLALVLSSLLLGSRTLGYSRAVLSLQLGGLFLVLGGFFRLFHNHGVQDALTGLYDLEAAMR
Ga0209152_100003793	F063565	N/A	MVDFSTISIVDAMSSRSLVFLGNITAIIMTVAAFFQALSWPIAGVLILISLILPLLADISLSKEGLASHQASKVPATTRHSQTETKVPQHRPLEKHAIPNRQLSTKIDQRPSPKPEPARTMGPKAGPKLTGSTIAAPRLGVPNVTAAPRPPVVEQVPNFNPKIAIGDYTEYDVELDAGKDFSGEVIATGLVNIYLLDEDNLDNLDQGEEFWSETGEEGIENAKLEFTALSKGKWFFVVENADDRAVSATVKIQKGTTSTEAAY