Scaffold Ga0209647_1005607

Overview

Basic Information

• Taxon OID: 3300026319
• Scaffold ID: Ga0209647_1005607
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_60cm (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9148
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (37.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: Laytonville, California, USA
• Coordinates
  • Lat. (^o): 39.7392
  • Long. (^o): -123.6308
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000525	Metagenome / Metatranscriptome	1049	Y
F008957	Metagenome / Metatranscriptome	325	Y
F057454	Metagenome / Metatranscriptome	136	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209647_10056071	F000525	N/A	MRTAKLSLLRALLCLLLLCLDLACSPRDFLTRRLAADLISTSDTFKAPQLFWLKTGIVSNQDFSSPDSMVLQHRGWIIGTQEKCPAGVDPPPCWEVVLTPLGVDTIRPLITTVLPENGPMSIQVARRELLSIAGISKAGNVADVEFTWHWVSINQVGAALYDNGVHYRSTVGFRGYDDGWRVVNQKIASNQTLDDALRNAQPTAR
Ga0209647_10056074	F008957	GGAG	MNEPVEQEKAEKLKRSNWWWPGVVASSLAGAAVLVFRGCWHGKMSWPICGQGYSYQVCLSCGAKRLFNEKTFNAYGPFRYDLNELSAWERSTKPNAHPVADGSQPPAS
Ga0209647_10056078	F057454	N/A	IIAVAVVAILLIALPAYRWFFLISFLIGLVIAGGLALWHKLHPIKEQDVQPKRPLGL