Scaffold Ga0209471_1168247

Overview

Basic Information

• Taxon OID: 3300026318
• Scaffold ID: Ga0209471_1168247
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 884
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: USA: California: Angelo Coastal Reserve
• Coordinates
  • Lat. (^o): 39.7392
  • Long. (^o): -123.6308
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002295	Metagenome / Metatranscriptome	574	Y
F062921	Metagenome / Metatranscriptome	130	Y
F105693	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209471_11682471	F105693	N/A	QSDHEKRRRYYKLTRTGKAVLAADISRMESVVRLARDKKLVPKTSE
Ga0209471_11682472	F002295	GGAG	MTSAVRVSCGLYKMLLFTYPSDFRLRFESEMVATFSDLICGEWKHNGVPGVARVWRSALGEVFSVAVPLHLQSLNVIPISLALLSSLALFMTVFHAMTHVCDGK
Ga0209471_11682473	F062921	AGGAG	MKKSYLFAGLLLGAMLPTVALGTPGVTGKWSGTLQMDGENDAKPAYSIFNQDGNKLSGSVGPSESEQDSFEGGNVDGDKLTFDVPQGPNGEGSIHVEMQVKGDQMTGRATWSGPPPHSGS