Scaffold Ga0209686_1129119

Overview

Basic Information

• Taxon OID: 3300026315
• Scaffold ID: Ga0209686_1129119
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_126 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 824
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: USA: California: Angelo Coastal Reserve
• Coordinates
  • Lat. (^o): 39.7392
  • Long. (^o): -123.6308
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F052813	Metagenome / Metatranscriptome	142	Y
F098967	Metagenome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209686_11291191	F098967	N/A	YVTGSVPPEVERRPVPLIVRETPRSLKLVRALLLVMAVMLAVNTRGRLGVVDQYGVSPGISPVVGTGILAVVGCSFLLACVGAFFLLGVPSKRHWWITLALPLLTIVNIVAAIVIIPADNVGVGLVLDVYLFNALLSLALVVLLLKRPVRAYFGISRPTTGAKAA
Ga0209686_11291192	F052813	N/A	HVVAACKYCGISTLDVSEMDLDSRMIAFLRVAGLGVNTATFSEFEPGERICTDCAGHEVECDVCGRVLDAFLDEGEYRRAKDDEAYVCSSCRGRVEDQLQPDRDW