Scaffold Ga0209761_1148789

Overview

Basic Information

• Taxon OID: 3300026313
• Scaffold ID: Ga0209761_1148789
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_40cm (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1106
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: Angelo Coastal Reserve, California, USA
• Coordinates
  • Lat. (^o): 39.718176
  • Long. (^o): -123.652732

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007431	Metagenome / Metatranscriptome	351	Y
F079893	Metagenome / Metatranscriptome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209761_11487891	F007431	GGAGG	VRPRRARVILNLVRGDTVSAPRPIDLIPEEPPRVVKLVLNGRATTLVVSLSRPDPARSARDRALALDADIVCLRVAPPGVPQPLGTICGRLNNVARELPLPTGDTLAATFAWPGWR
Ga0209761_11487892	F079893	GAGG	VGLSSFTSVILALSALQGPGTRLTYRIRVIEPASVAPRILASGAVSGPLDSDMRLTLRTDTAEVEAFFQVAPTVGDTVSLTGEFYMRRLVGRSRRGLPLWEEDTYRRLVRLAWSDTARIYPFGTGKRGQRGGGLPKPSIWSIRRATSAWRQSCGRAARG