Scaffold Ga0209153_1000343

Overview

Basic Information

• Taxon OID: 3300026312
• Scaffold ID: Ga0209153_1000343
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_120 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 23540
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (82.61%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: USA: California: Angelo Coastal Reserve
• Coordinates
  • Lat. (^o): 39.7392
  • Long. (^o): -123.6308
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023561	Metagenome / Metatranscriptome	209	Y
F057271	Metagenome / Metatranscriptome	136	Y
F059788	Metagenome	133	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209153_100034315	F057271	AGGA	MGTYHVEQPSREDEVLSDYPFHFFGRTITITGHEQFLALLFLVVVAMTWGVLQLRRRRVVVLQRSAVSDQLVYELSRIADALDRLSNRSLDQSMQQTIPAATSGFKEEEPRSMPFSMFGRER
Ga0209153_100034318	F023561	GGAG	MSQPLVLEFVLVSSDYAIMQVVSKAAKKLGAQLVLIPTAHEARELLKRRKIDGVFLDKEVPGALGLSESTRKGASAYLWACVSAPRANWLG
Ga0209153_10003439	F059788	AGGAGG	MWNLLKRSNAECRRFRDALEKAAVHHASAASVESLKEELTAEERKHIESCSDCREAVEELAATKELFEGLASFAGQKRPWFSARVMAAIASRERELAERVSAWAEFPRFASRLTWIAAIVLLASTTWFYESVLRAPSHPRSGSQESIFEAPQQTAPDDILVSQVGDRP