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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300026312 Open in IMG/M |
| Scaffold ID | Ga0209153_1000062 Open in IMG/M |
| Source Dataset Name | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_120 (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 53066 |
| Total Scaffold Genes | 56 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 39 (69.64%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Acidobacteria | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: California: Angelo Coastal Reserve | |||||||
| Coordinates | Lat. (o) | 39.7392 | Long. (o) | -123.6308 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001278 | Metagenome / Metatranscriptome | 733 | Y |
| F002627 | Metagenome / Metatranscriptome | 542 | Y |
| F049546 | Metagenome | 146 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209153_100006236 | F002627 | AGGAG | MRHSWQKPMRTRLFLAFALLIGTRGSAASAQERKVAQVKGVDNSKMGPYRALAQHIYSDFQKGDVAAAAEMGRVLERLWDKAEDYGGDTALSKTNHKLFEEIDKAMDEFLTPLWEAKGKPPDAAKVKAAYNHYPETLKLAA |
| Ga0209153_100006243 | F049546 | GGAGG | MSRLTSLLAATFLCAGLSWTPADAQDSSQAQPSLGDIARQARKDKEKNAARSKMVITDDTLPSSMALAGLGDLGSAQAGGSGSAMDKALAKVAEAETALKQLESLDRATLAKAVLLDHDVDFANRRAWEDKLYAAREHYVSHEAELIVELKQILARIQSRQLGPTKLDPNDPRAQQMKNRLMEIVQDALRTEQDYRAVVMEGWDLAKQAQH |
| Ga0209153_100006254 | F001278 | N/A | MTKLLITEITRMGPAFCVIGLQRENQKMQSVRPIPCSAHSWTYFPHRRGDILECALTPFPGTFPHVEDRVVTKGFRKCAVVREAEVAGYLRKAECSESLRGLFECSICENKQGSGAYALPAEARRSISGCQTQNLRLELCGNELRATLVLSSGEVLRDLPVVDRDWLDFVDAALAANRGANRAARLARFLNSQFHCKIMSCAHHFVRIGLTRPYREVCWLMLDTLFPLPKADWLEEF |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |