Scaffold Ga0209239_1209642

Overview

Basic Information

• Taxon OID: 3300026310
• Scaffold ID: Ga0209239_1209642
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_2_20cm (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 692
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: Angelo Coastal Reserve, California, USA
• Coordinates
  • Lat. (^o): 39.73825
  • Long. (^o): -123.6301

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015192	Metagenome	256	Y
F097046	Metagenome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209239_12096421	F015192	N/A	MESEDRTHPPVRAGDLDGLRRIYSDAGGLITESDEEMLMAATGWDVEVCSPWRRFLPKIIFAGFGGQASSKLFVTTKRLVIVRDIDTWRELKGELTPLGVPTAAAKEARLRKLKSLGVRQYCEIRPHNLRLVKKRSFDRRQSWIDLRLIGTDGKQYA
Ga0209239_12096422	F097046	N/A	ALLGIMPNPLALKIVSTPGSTITFLFEYVFGSEIPSDVAEDALIGLLNFLADEARFDNSLDPPVPTLLLVP