Scaffold Ga0209055_1025963

Overview

Basic Information

• Taxon OID: 3300026309
• Scaffold ID: Ga0209055_1025963
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2744
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: USA: California: Angelo Coastal Reserve
• Coordinates
  • Lat. (^o): 39.7392
  • Long. (^o): -123.6308
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004518	Metagenome	434	Y
F012652	Metagenome	278	Y
F061709	Metagenome	131	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209055_10259632	F061709	N/A	MVRLPGDVVRALRRRATTADITLAQAARQFMPPTDVQHTLGLLEHVAWLHTRLVRRRDDLFSVFEDGGADAKAVDRTIDALAVLLKEWPEETGYDFAAHGMGQPQ
Ga0209055_10259633	F012652	GGAG	MKTKTTKTKPSRPFRSSSDAIDEILWGYGPRARIVVLWRQLDGKHDVWTYLGRLDPAECEIEMIGDRFGGGWYRAKILGAWDPELRREEYFEQVSFGIAEQGWAVTAETRDRIRKQHGM
Ga0209055_10259634	F004518	AGCAG	MRDSRSVGLDLPDDTPPWLAAFILEAQRETDTLRDNGAEQAAAARVALLRKLIAAEAASETGRCEETIRRAVRAGTIPDRRANPKGRHRVRRGDLQKLAAPPAGPYDPGADAQDIARLRRKV