Scaffold Ga0209055_1001485

Overview

Basic Information

• Taxon OID: 3300026309
• Scaffold ID: Ga0209055_1001485
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15420
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (62.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: USA: California: Angelo Coastal Reserve
• Coordinates
  • Lat. (^o): 39.7392
  • Long. (^o): -123.6308
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002008	Metagenome / Metatranscriptome	604	Y
F017117	Metagenome / Metatranscriptome	242	Y
F021075	Metagenome / Metatranscriptome	220	Y
F028139	Metagenome / Metatranscriptome	192	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209055_100148511	F002008	AGGA	LETTDKKVLKTCLVCKRTFLGWFSEKYCSADCRMEGNRLKARLRKRKSRKVGDLKEGVISQQLGELGLAETQYPMYNHEIVPTMYANFSFYHARDGKRHVRSYYDLLRDIAKLNGTDLRTMLANMAPRDEQN
Ga0209055_10014853	F021075	N/A	MKLAGNDKILVITFAVMSACGFLFTPGGLETRPLCAFRSYALVPLFFAGTILDFASLILIFKKPRIATITGIVAAVEYGFLAPGYQAQLFFVGVPVPVGVTINEIVALIASIVVLLFAPMVYLANRESSKPTR
Ga0209055_10014854	F028139	GAG	VSYNLPPDAEYSLLQLILYVLSFVTVILIFLYIASERPGEKKKKDEEED
Ga0209055_10014855	F017117	GAG	LVVISDPIVWSTIVQTIVLSLTLVIFTLSFRSQNKAIQEQAYQKVMDDYGDAMRMLSERPELYAFQLELFNISGQPFGREQKSYSREEMVIRNYVIMLYGFFERIHFLYRRKWIDEATWKQWAAFLEVVAAHPVFRDVHQSSREMFDKPFQDYVSGILSRKK