Scaffold Ga0209265_1042330

Overview

Basic Information

• Taxon OID: 3300026308
• Scaffold ID: Ga0209265_1042330
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_103 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1410
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: USA: California: Angelo Coastal Reserve
• Coordinates
  • Lat. (^o): 39.7392
  • Long. (^o): -123.6308
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003152	Metagenome / Metatranscriptome	504	Y
F071103	Metagenome / Metatranscriptome	122	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209265_10423301	F071103	N/A	LRVFVPQTLSQIRGGKIAGVSMDKAAYFLSWVRTEQHEGMEPVGQSKIVRTGFAPEGGGEPDFSYDEYVEFIEHFRDIAHKIPDEVLEAEKFQAQALARAA
Ga0209265_10423302	F003152	GGA	VEFDHWLYGAVSGTGYTTKAVSKGLDAGLYDQYLRGHYTPIRAATAQSYEDPIDLHMIHPVHGGREILLSRITRGPPDEAGRPTFANHTIVGRTEPLRSGLITLDSVFRAMGEFDRKAPDVMGEMPPLEIPTRSEEERKAPFGLGIHRHVTFPALETLATRIMADATSRTLLLCRNTTPEARNATLHLVFELLCWGCGLPILTAISETPRSSAMNFFNLVVAPRGVRADSSWAILESALAEPVLPRVMDRDDVYQKLTTIVRQAPGLPLAR