Scaffold Ga0209468_1000020

Overview

Basic Information

• Taxon OID: 3300026306
• Scaffold ID: Ga0209468_1000020
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_102 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 91447
• Total Scaffold Genes: 81
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 56 (69.14%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: USA: California: Angelo Coastal Reserve
• Coordinates
  • Lat. (^o): 39.7392
  • Long. (^o): -123.6308
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007132	Metagenome / Metatranscriptome	357	Y
F024882	Metagenome / Metatranscriptome	204	Y
F026373	Metagenome / Metatranscriptome	198	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209468_100002034	F026373	GGAG	MLVSRAFDEIRVFEGVAERTGVQFERDTVRRSDACCRSMTELIRKGRASGDGYFYLPFGLWPAGTESFELHKQWVVQA
Ga0209468_100002038	F007132	AGGAG	MTRQAVRLTAGRVLRSDDLIAGEKEVAAEILRANPDFGNPHAVRCDWCHEIRTLFRDESDGPFKLMERGWLCEPCNIRAASQEIKF
Ga0209468_100002075	F024882	GGA	MACDHKGGPELIEMAEQHLRELGRAPEPGMRFRWSENLDEGMWASVIVEIERRGDAWIITRIDRRREPLDEAECGFRSLA