Scaffold Ga0209240_1004079

Overview

Basic Information

• Taxon OID: 3300026304
• Scaffold ID: Ga0209240_1004079
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_80cm (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5510
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: Laytonville, California, USA
• Coordinates
  • Lat. (^o): 39.7392
  • Long. (^o): -123.6308
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000242	Metagenome / Metatranscriptome	1480	Y
F000252	Metagenome / Metatranscriptome	1455	Y
F065065	Metagenome / Metatranscriptome	128	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209240_10040792	F000242	GGAG	MCWEIDYKLFAERKKAHEIRIEQERRAGVIVQLLNEANKQGEKGKVEGTPVKEAAPAK
Ga0209240_10040794	F000252	GGAG	MAREELKWQNIDADDLPAAVKKSFDAMVEAEDTFKADLEKLLKNEGHMPDDKFLVMSRKGKRLGVAFASTPRGEGGAGSLKFKTK
Ga0209240_10040795	F065065	GGAG	MRLLYSLAAAILVTVLLPVLHASAFSTDPTSGTNPDGSPRFVDPDDQIRSFFFGGSGVNEDGWADRNSAPRTAFPSPDGTNQGITFPTWFFPTSPGR