Scaffold Ga0209238_1002496

Overview

Basic Information

• Taxon OID: 3300026301
• Scaffold ID: Ga0209238_1002496
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_20cm (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7273
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: Angelo Coastal Reserve, California, USA
• Coordinates
  • Lat. (^o): 39.73825
  • Long. (^o): -123.6301

Associated Families

Family	Category	Number of Sequences	3D Structure?
F084660	Metagenome / Metatranscriptome	112	N
F104847	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209238_10024964	F084660	GAGG	MQNKSDLLDTDLLPIRTAEGIPPAVCEAVPTGWPVVICFASCIGSSNVLELSTNRKSAPFPAR
Ga0209238_10024966	F104847	AGG	MLVMVPLNRRKTVISAALTAVFVLVSCSARQPIAPAFVPFRLESVSGDSVLLTPPVPEGKDEYASIKLVLKSSPAPPRLHCFAERGHFRVEQEKNGPNSVHITMPSPATWLSDLEGRLGSGGDGGIEALFTILADLDKLREAGCFPDTKLSIRDFILQSLPMKPTDSLFNYYGYLADWSGLDLTPGMRLKIERAYFRPAEVGEEEHSAKLFLGLSTAYFDLQLASNGKIRFHQKGTARYTPASLTHQLQEGTSDLGVSSIPPERHFRLLFNTYFVPEKHTRSTAIIGATYTSQLDQLDKELRAHPDEDCKNAAATYGAICFAFPGFVTLTPQVKVELSGKTRFVDVGTKIKELLSRSQADALKSLRIQRRFLDSYYDLHFDPADLNVLSLTLVAGDRVSLSTSSRVLH