NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209234_1001476

Scaffold Ga0209234_1001476


Overview

Basic Information
Taxon OID3300026295 Open in IMG/M
Scaffold IDGa0209234_1001476 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_20cm (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8813
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (70.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameAngelo Coastal Reserve, California, USA
CoordinatesLat. (o)39.718176Long. (o)-123.652732Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003152Metagenome / Metatranscriptome504Y
F009676Metagenome / Metatranscriptome314N
F104901Metagenome100N

Sequences

Protein IDFamilyRBSSequence
Ga0209234_10014765F003152AGTAGGMAPAESDRGATDGDVVEFDHWIYGVVPGVGYTTKAVSHGLDAGLYDPYLRGHYTPIRAAAAQTAEDEVDLHMIHPLRTGRELLLSRISRGIPDEAGRPTFTNHTVIARTDVLRSGEITLEAVYRSVKEFDRKAADVGPEVPLLKVPARPEAEGPWRFGNGIHKHLTFPAIESLATRIMTDPNSRTLLLCRNTTAEARKATLNLVYELLAWGCGLPLMTAISEAPRSSALNFFNFVVAPRGVRADSTWAILESALSESVLPRVLDRDEVYRVLTATVRQSADLPLAR
Ga0209234_10014766F009676N/AMPCALLGDRASGKTTFLGLLYSAQVKYGTGVQDDFRFHAPIQSLNIMSAVYEGMKDGRFPSATLKEEITELGFVFGYLRKVVGKLPYYIRQQNWVHPFSTLRFSAYDVSGEDIEEFIETGIASRPLIQQLLKSVVVCVLVDCSKMTTEIDTPAYKKMLRYDSTVAKLLVSFQTYKKQEYDRLKDSGVRADSPKIYPVFVLSKFDTLRDDVLARLGLHRGFPDNNRARKEYAEALLRVFVPQTLSQIRGGKVAGVSMDKSAYFLSWVRTETHEGMDPVGQSKIVRTGFAPEGGGEPDFSYDEYVNFIEHFRDIAHKIPDEILEAERFQAQVMARSA
Ga0209234_10014767F104901AGGAMLRREGYPEFRGRLLVPRVVIVGDRNSGKTTFLGLLYAAQVKFGSDKADGFRFHASFESLDEISGVFQRLMSGSFPDAATKEGVREIAFRLGHRRSGLGILSRRKSRGSSPDSSASFQLILLKSFEDEMARSGNRGSVDQRTLSSALTGDAFVIMIDATSLAVADEEGELAPSGKYDEAVASLLMAIQRSRDQAQDKFLHPIFVLSKFDQVDPEVLRHMDLDAAPPDVSKKGPHAEYAKRLVDPSMPKTMAALRSGGRRGLQFATPVYFFSWVRTDEPALGRDERLRLRRRGAVGWEPDYPSDEYLAFLECLAGIAADTRA

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